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Nix Data Science

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25 Aug 2022
@entheogenesis:matrix.orgentheogenesis joined the room.17:46:09
30 Aug 2022
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5 Sep 2022
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6 Sep 2022
@hinklejd:matrix.orghacobjinkleNix is attractive for reproducibility and provenance tracking. However, for ML workflows one major limitation is that all data produced as part of a derivation resides in /nix/store. It would be great to be able to define flakes for large datasets and use them as inputs to other programs/flakes. For example define a flake for ImageNet and then get train and test splits as outputs of those downstream flakes. Currently such a train/test split would require duplication of the original dataset twice into /nix/store if I'm not mistaken.15:34:39
@hinklejd:matrix.orghacobjinkleapologies if there is an existing solution to this kind of data handling with nix that I'm unaware of15:35:12
@hinklejd:matrix.orghacobjinklei guess the splitting could of course be done with symlinks. main question is then is there any hope of handling large datasets at rest on some storage outside /nix15:39:06
@FRidh:matrix.orgFRidhNix master supports impure derivations. Impure derivations have network access, so you could write your result somewhere else. I have not tried this yet, but I imagine this going to be very useful also in CI/CD.17:04:49
@FRidh:matrix.orgFRidhhttps://github.com/NixOS/nix/pull/622717:05:19
@hinklejd:matrix.orghacobjinklethanks. I currently use --impure on non-NixOS with nixGL to get cuda working anyway, so that may be the ticket17:07:24
@FRidh:matrix.orgFRidhthat's not the same though, that's impure evaluation17:08:40
@hinklejd:matrix.orghacobjinklei see that now. should've read before replying..17:09:23
7 Sep 2022
@ss:someonex.netSomeoneSerge (hash-versioned python modules when)

Has anyone got a working example of micromamba environment?
I've tried using it in a bulidFHSUserEnv(Bubblewrap) with this in /etc/profile:

    eval "$(micromamba shell hook --shell=bash)"
    micromamba activate

...but it keeps segfaulting later when I prompt micromamba activate $envName

What helps is running the eval "$(...)" in the shell manually

12:43:40
15 Sep 2022
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16 Sep 2022
@tyberius_prime:matrix.orgTyberiusPrime (smilodon inopinatus) changed their display name from TyberiusPrime to TyberiusPrime (fiber at home when).07:37:08
@sepiabrown:matrix.orgSuwon Park joined the room.18:17:04
@sepiabrown:matrix.orgSuwon Park
In reply to @flxai:matrix.org
I am new to NixOS and wondering what's a good way to set up Jupyter. Are there opinions on JupyterWith or maybe some general recommendations?
Try using jupyterWith + poetry2nix with flake.nix! It's hard but fun!
18:33:55

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