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Nix Data Science

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25 Jan 2024
@crtified:crtified.meCRTifiedGenerally a nice thing, although painful for larger files. Not directly related to data science, but it was a pain to get vivado (fpga IDE/tool chain) into the store, and that's only like 25GiB worth of data16:34:48
@trexd:matrix.orgtrexdOk thats around the dataset size that I'm dealing with but I can decrompress it before training so fitting it in the store compressed should make things easier. 16:44:30
26 Jan 2024
@benoitdr:matrix.orgbenoitdrIs everyone OK with that ? I guess uploading large datasets to the nix store will increase the nix store hosting costs (on S3 ?). Another option could be to store the datasets in dedicated platforms (HugggingFace, Kaggle, ....) and store pointers in the nix store.09:03:33
@crtified:crtified.meCRTified
In reply to @benoitdr:matrix.org
Is everyone OK with that ? I guess uploading large datasets to the nix store will increase the nix store hosting costs (on S3 ?). Another option could be to store the datasets in dedicated platforms (HugggingFace, Kaggle, ....) and store pointers in the nix store.
Depending on how you point to the dataset, it will end up in the nix store after pulling
11:15:51
@crtified:crtified.meCRTifiedMight require to break the sandboxing to allow network access11:16:10
@maupind:matrix.orgmaupindDoes anyone have any experience overwriting python dependencies? I'm trying to get a project with botorch/ax working, but they have the package linear operator as a dependency which is failing due to its typeguard dependency being far behind. I feel like I am close with a post patch override but something is missing15:27:38
@raitobezarius:matrix.orgraitobezarius
In reply to @benoitdr:matrix.org
Is everyone OK with that ? I guess uploading large datasets to the nix store will increase the nix store hosting costs (on S3 ?). Another option could be to store the datasets in dedicated platforms (HugggingFace, Kaggle, ....) and store pointers in the nix store.
OK with what?
15:32:39
@raitobezarius:matrix.orgraitobezariusWe were not talking about cache.nixos.org, were we?15:32:58
@benoitdr:matrix.orgbenoitdr
In reply to @raitobezarius:matrix.org
OK with what?
OK with storing datasets in the nix store
15:33:30
@raitobezarius:matrix.orgraitobezariusWell whether you upload it to the Nix store or to some random platform, what does that change?15:34:11
@raitobezarius:matrix.orgraitobezariusIt needs to be stored somewhere?15:34:16
@benoitdr:matrix.orgbenoitdr
In reply to @raitobezarius:matrix.org
Well whether you upload it to the Nix store or to some random platform, what does that change?
the one who is paying for the storage ;-) There is no free lunch ...
15:34:54
@raitobezarius:matrix.orgraitobezariusAgain, we are not talking about cache.nixos.org, are we?15:35:28
@raitobezarius:matrix.orgraitobezariusLike even if you have pointers inside your remote storage, that does not change a lot that you are going to store a large buffer at some point somewhere, either in memory or on disk15:35:53
@benoitdr:matrix.orgbenoitdr
In reply to @raitobezarius:matrix.org
Again, we are not talking about cache.nixos.org, are we?
that's what I understood what maybe I got it wrong
15:36:08
@raitobezarius:matrix.orgraitobezarius"The Nix store" is not cache.nixos.org, right?15:36:32
@benoitdr:matrix.orgbenoitdr
In reply to @raitobezarius:matrix.org
Again, we are not talking about cache.nixos.org, are we?
* that's what I understood but maybe I got it wrong
15:36:44
@raitobezarius:matrix.orgraitobezariusEveryone who is using Nix has "the Nix store", in their local filesystem, it is in /nix/store15:36:46
@raitobezarius:matrix.orgraitobezariusBut yes, storing datasets in cache.nixos.org is mostly out of the question, at the moment, for the cost reasons you mentioned15:37:12
@raitobezarius:matrix.orgraitobezariusStoring datasets in your own Nix store seems an interesting question to me though15:37:20
@raitobezarius:matrix.orgraitobezariusCompared to… store it locally on-disk, mount it from a remote location and buffer it, etc.15:37:44
@benoitdr:matrix.orgbenoitdr fully agree on that ... trexd , Can you clarify your request ? 15:38:27
@trexd:matrix.orgtrexd
In reply to @benoitdr:matrix.org
fully agree on that ... trexd , Can you clarify your request ?
I just meant /nix/store locally.
15:48:04
@benoitdr:matrix.orgbenoitdrOK sorry for confusion, personally I'll stick to a local minio server to store and share datasets locally. I tend to prefer a clear separation between code and data ;-)15:51:11
@benoitdr:matrix.orgbenoitdr

I have built a docker image of an application that requires nvidia/cuda using dockerTools.buildImage. The image runs fine with nvidia-docker -run .... however, when I start a container from the same image via docker-compose, I have the following error :

Error response from daemon: failed to create task for container: failed to create shim task: OCI runtime create failed: runc create failed: unable to start container process: error during container init: error running hook #0: error running hook: exit status 1, stdout: , stderr: nvidia-container-cli: ldcache error: process /nix/store/cx01qk0qyylvkgisbwc7d3pk8sliccgh-glibc-2.38-27-bin/bin/ldconfig failed with error code: 1: unknown

I have added the few lines that are usually required to run nvidia/cuda images with docker-compose :

    deploy:
        resources:
          reservations:
            devices:
              - driver: nvidia
                device_ids: ['0']
                capabilities: [gpu]

Note that other images (from docker hub) that require nvidia/cuda are working fine with these few lines.
Any idea what could go wrong ?

20:49:40
@ss:someonex.netSomeone Sdidn't read but do check out the nvidia-container-toolkit cdi PR maybe21:50:43
29 Jan 2024
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31 Jan 2024
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