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Nix Data Science

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5 May 2024
@brodriguesco:matrix.orgBruno RodriguesI do something like that using R but I rebuild the whole thing as there's no computation involved 15:02:04
@brodriguesco:matrix.orgBruno Rodrigueshere's a demo https://github.com/b-rodrigues/render_quarto_test 15:02:12
@brodriguesco:matrix.orgBruno Rodriguesbut if I only wanted to rebuild parts of it, I'd use targets instead of calling quarto directly 15:03:13
@brodriguesco:matrix.orgBruno RodriguesAlso, this uses a quarto markdown source document, but you can just as well use Latex 15:03:52
@gtrunsec:matrix.orgguangtaohttps://github.com/hardenedlinux/AISecurity-Research-Template15:24:07
@gtrunsec:matrix.orgguangtaoquarto+jupyenv+drvparts+dream2nix+std example heee15:24:57
@markus.lohmayer:matrix.org@markus.lohmayer:matrix.orgThanks for sharing your templates. While I can definitely learn something from each of them, I am still wondering how I could compile the plots if the code changed and compile the LaTeX if the TeX code or the plots changed.17:34:27
@markus.lohmayer:matrix.org@markus.lohmayer:matrix.orgI am thinking if this is something that should be done with Nix. Maybe not since Nix puts everything it builds into the Store, right?17:35:44
@markus.lohmayer:matrix.org@markus.lohmayer:matrix.orgIsn't this a problem that comes up eg with monorepos? isn't there are simple solution then?17:36:44
@gtrunsec:matrix.orgguangtao
In reply to @markus.lohmayer:matrix.org
Thanks for sharing your templates. While I can definitely learn something from each of them, I am still wondering how I could compile the plots if the code changed and compile the LaTeX if the TeX code or the plots changed.
I don't really understand your motivation. if the plots changed just quarto rebuild the qmd dir, that's all
17:56:04
@gtrunsec:matrix.orgguangtaonix only used to build and control the kernels' generatation17:56:38
@gtrunsec:matrix.orgguangtaoalso there is no reason to exec 'quarto build' inside the nix store17:57:46
@markus.lohmayer:matrix.org@markus.lohmayer:matrix.orgOK, I don't know quarto, that's the point. but it sounds like it is doing what I need. I will have a look18:21:48
@markus.lohmayer:matrix.org@markus.lohmayer:matrix.orgOk, I already stated that I am stuck with LaTeX, so suggesting quarto, as I understand by looking at quatro.org, is not helpful.18:26:47
@jb:vk3.wtfjbedo fetchurl and fetchgit have postFetch which you could use to extract the paper/figure code 22:10:11
6 May 2024
@kupac:matrix.orgkupacA more 20th century solution would be GNU make to not have to recalculate unchanged stuff.06:51:38
9 May 2024
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12 May 2024
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16 May 2024
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20 May 2024
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21 May 2024
@maxwell.gisborne:matrix.orgmaxwell joined the room.09:44:44
@maxwell.gisborne:matrix.orgmaxwellhello09:44:50
@maxwell.gisborne:matrix.orgmaxwellI was trying to get a jupyter notebook setup following [this][https://nixos.wiki/wiki/Workgroup:DataScience] wiki page09:45:54
@maxwell.gisborne:matrix.orgmaxwell I needed to use python 3.9+ preferably 3.11, which is whats provided by pkgs.python3. I there for dutifuly updated the top line so that it reads pythonPackages ? pkgs.python3Packages, but it seems that a number of packages used in this recipy are not avalible in python3, firstly was ipythonwebrtc, then also pythreejs, and jupyterlab-latex 09:48:43
@maxwell.gisborne:matrix.orgmaxwellThis is problematic. I am looking for advice on how I should proceed 09:48:57

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