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Nix Data Science

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27 Jul 2023
@ribosomerocker:matrix.orgribosomerocker joined the room.02:59:08
@tomberek:matrix.orgtomberek I know there are reasons this is imperfect, but i played with allowing a dot-separated mechanism to compose withPackages: nix shell github:tomberek/-#python3With.numpy.requests -c python -c 'import numpy;print(0.1)' it does support tab-completion! 20:33:36
29 Jul 2023
@brodriguesco:matrix.orgBruno Rodrigues
In reply to @brodriguesco:matrix.org
fellow Nixers, I'm a beginner and started a series of blog posts that might interest some of you. It focuses on R but I believe a lot of what I describe could be used for any language
friends, I've now published part 3: https://www.brodrigues.co/blog/2023-07-30-nix_for_r_part3/
21:39:50
30 Jul 2023
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@jb:vk3.wtfjbedo starting a new room for nixpkgs R language support discussions: #r:vk3.wtf 06:26:39
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@petrichor:envs.netJez (he/him) ♾️has anyone packaged up openrefine for nix?15:39:04
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9 Aug 2023
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27 Aug 2023
@brodriguesco:matrix.orgBruno Rodrigueshi all, just saw this on twitter, might be of interest to this group: https://twitter.com/DeterminateSys/status/1695567786309783819?s=2021:21:31
28 Aug 2023
@crtified:crtified.meCRTified joined the room.19:13:30
@crtified:crtified.meCRTifiedHey, I'm currently trying to setup a slurm cluster and want to run a test within a VM. Having no state, I am always met with this failure, which is fixed after one restart (leading to other errors, which is fixed by a second restart):19:25:14
@crtified:crtified.meCRTifiedimage.png
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19:25:21
@crtified:crtified.meCRTified Apparently, slurmdbd is not running when slurmctld gets started, but even after putting slurmdbd in the require and after fields of the slurmctld unit, this behaviour appears 19:26:14
@crtified:crtified.meCRTified

The relevant config for slurmctld and slurmdbd is this here (and there's a mariadb with ensureDatabase/ensureUsers):

    slurm = {
      server.enable = true;

      dbdserver = {
        enable = true;
        extraConfig = ''
          PidFile=/run/slurmdbd.pid
          StorageHost=localhost
        '';
      };

    extraConfig = ''
      AccountingStorageHost=${config.clusterRole.slurmServer}-link
      AccountingStorageType=accounting_storage/slurmdbd
    '';
    };
19:28:39
@crtified:crtified.meCRTified *

The relevant config for slurmctld and slurmdbd is this here (and there's a mariadb with ensureDatabase/ensureUsers):

    services.slurm = {
      server.enable = true;

      dbdserver = {
        enable = true;
        extraConfig = ''
          PidFile=/run/slurmdbd.pid
          StorageHost=localhost
        '';
      };

    extraConfig = ''
      AccountingStorageHost=${config.clusterRole.slurmServer}-link
      AccountingStorageType=accounting_storage/slurmdbd
    '';
    };
19:28:51
@crtified:crtified.meCRTified *

The relevant config for slurmctld and slurmdbd is this here (and there's a mariadb with ensureDatabase/ensureUsers):

    services.slurm = {
      server.enable = true;

      dbdserver = {
        enable = true;
        extraConfig = ''
          PidFile=/run/slurmdbd.pid
          StorageHost=localhost
        '';
      };

    extraConfig = ''
      AccountingStorageHost=server04-link
      AccountingStorageType=accounting_storage/slurmdbd
    '';
    };
19:29:26
@crtified:crtified.meCRTifiedoh wait, it's possible that slurm is not that common in data science and this is the wrong channel, or?19:29:55
@crtified:crtified.meCRTified (Oh wow, sleep 10 in the preStart is sufficient to make it work...) 20:18:00

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