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Nix Data Science

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28 Feb 2023
@ss:someonex.netSomeoneSerge (hash-versioned python modules when) I just checked, .dev only contains include/ there 23:28:20
@apache8080:matrix.orgapache8080 I just ran ldd on my rust binary and it looks like it is only linking libtorch_cpu.so so this may be related 23:30:23
@ss:someonex.netSomeoneSerge (hash-versioned python modules when) I'd look into tch-rs's discovery logic, maybe 23:31:37
@apache8080:matrix.orgapache8080good point, it may not like the include and lib being split that the nixpkg currently does23:33:04
@apache8080:matrix.orgapache8080ok it is working now23:38:15
@apache8080:matrix.orgapache8080that was the issue23:38:18
@apache8080:matrix.orgapache8080 Had to combine python3Packages.torch.dev and python3Packages.torch.lib into a single path 23:38:51
@ss:someonex.netSomeoneSerge (hash-versioned python modules when) tch-rs README also mentions one can use LIBTORCH_INCLUDE + LIBTORCH_LIB instead of LIBTORCH 23:39:50
@apache8080:matrix.orgapache8080ah I'm blind, thanks for pointing that out lol23:42:21
1 Mar 2023
@ss:someonex.netSomeoneSerge (hash-versioned python modules when)On that note, figured maybe I'd assemble a cmake+nix mwe for consuming pytorch: https://github.com/SomeoneSerge/nix-torchlib-shell01:35:54
5 Mar 2023
@mezzopiano:matrix.orgfelix joined the room.13:32:04
6 Mar 2023
@ss:someonex.netSomeoneSerge (hash-versioned python modules when)https://github.com/NixOS/nixpkgs/pull/21910420:39:30
@ss:someonex.netSomeoneSerge (hash-versioned python modules when)Something to be aware of, and something that needs to be eventually addressed20:40:21
11 Mar 2023
@atrius:matrix.orgmjlbach joined the room.16:47:29
@atrius:matrix.orgmjlbach apache8080: Can you post your shell? I'm having trouble getting working torch + cuda support 16:59:50
@orahcio:matrix.orgorahcio joined the room.23:15:04
12 Mar 2023
@orahcio:matrix.orgorahcio Good night. Is there a way to use jupyenv (old jupyterWith) as a system wide package? 02:22:19
@palasso:matrix.orgVassilis Palassopoulos joined the room.21:24:48
14 Mar 2023
@butterchicken:hive-mind.networkbutterchicken joined the room.23:00:39
17 Mar 2023
@gr_h_m:matrix.orggr_h_m joined the room.08:52:30
20 Mar 2023
@tyberius_prime:matrix.orgTyberiusPrime changed their display name from TyberiusPrime (fiber at home when) to TyberiusPrime (limited to 25 messages per 3 hours. Expect further significant reductions).09:51:21
21 Mar 2023
@carlthome:matrix.orgCarl ThoméAny feedback/tips on this setup? https://github.com/carlthome/ml-runtimes I'm playing around with the idea of replacing devcontainers at work but felt jupyterWith was a little too brittle in my previous tinkering.23:16:36
22 Mar 2023
@valconius:matrix.orgvalconius joined the room.00:00:19
@atrius:matrix.orgmjlbach changed their display name from mjlbach to mjlbach (Old).05:14:34
@atrius:matrix.orgmjlbach changed their display name from mjlbach (Old) to mjlbach.05:51:06
23 Mar 2023
@necrophcodr:matrix.orgnecrophcodrI've been trying to work on making developer shells for R projects, but I'm having some trouble with renv and openssl (specifically, but probably not exclusively). Is there a good way to setup developer shells where renv works with openssl, or perhaps even a good way to parse renv.lock files into NixOS R derivations?14:55:51
@jb:vk3.wtfjbedoRenv and nix have overlapping functionality, was there something you specifically needed renv for? 21:03:13
@jb:vk3.wtfjbedoYou might also be interested in https://github.com/TyberiusPrime/nixR if the framework in nixpkgs isn't sufficient for your use case21:15:20
@necrophcodr:matrix.orgnecrophcodr
In reply to @jb:vk3.wtf
Renv and nix have overlapping functionality, was there something you specifically needed renv for?
Yes, R development on Windows. We do not work in a homogeneous environment
22:08:44
@necrophcodr:matrix.orgnecrophcodrIf everyone used NixOS I wouldn't even be asking either, we'd just use Nix flakes for the entire thing and have it be reproducible that way. Unfortunately that is not an option here with too much overlap between not only departments but also organisations.22:10:31

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