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Nix Data Science

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8 Mar 2026
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8 Apr 2026
@jonny731:matrix.orgJonnyTest joined the room.15:39:28
@jonny731:matrix.orgJonnyTest

Hi everyone,
I've been trying for three days to get a (mini-) conda environment running using a predefined env.yaml file. The .yaml file includes packages like r-base, jupyter Lab, Python and others. My goal is to use the R kernel in Jupyter Lab. But it just won't work (though the Python kernel does work).
So I installed the conda shell with “nix-env -iA nixos.conda” (should I even use nix-env?), activated it, and created the desired environment from the .yaml file. Then I activated Jupyter Lab to run R commands there, but my R kernel won’t connect. I’m getting warnings that the “utils” and “stats” packages can’t be found, even though they’re there. I’ve tried everything possible, reinstalling conda and the environment, but I keep getting the same errors. Then I thought, okay, this must have something to do with R. Instead of using the YAML file, I just downloaded R-base into a new environment with “conda create -n r_test r-base -c conda-forge,” went into the R terminal (“R”) to install both packages there, but the packages cannot be installed.
I think this is a very simple mistake, but I’m too clueless to figure it out. Anyone who wants to test it is welcome to run these commands:

  1. nix-env -iA nixos.conda
  2. conda-shell
  3. conda create -n r_test r-base -c conda-forge
  4. conda activate r_test
  5. R
15:50:51
@jonny731:matrix.orgJonnyTestFinally, the R kernel is working smoothly in Jupyter Lab now. https://github.com/JonnyTtest/nixos-conda-r-jupyter-guide/blob/main/README.md20:20:36
@jb:vk3.wtfjbedojust wondering if you tried the R language support in nixpkgs or if that wasn't suitable for some reason?22:02:47
9 Apr 2026
@jonny731:matrix.orgJonnyTestI don't know, I probably should have used flake.nix, but it seemed too fancy to me and I have no idea how it works. My solution doesn't seem ideal for NixOS, but it works10:34:09
@jb:vk3.wtfjbedo don't have to use flakes, the R language framework is documented at https://nixos.org/manual/nixpkgs/stable/#r 11:26:16
10 Apr 2026
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24 May 2021
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