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Poetry2nix

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14 Aug 2022
@k900:0upti.meK900 Try adding echo $TMPDIR actually 14:20:44
@k900:0upti.meK900Just to make sure it's set 14:20:47
@ethanabrooks:matrix.orgEthan Brooks 
{
  buildPythonPackage,
  fetchPypi,
  numpy,
  setuptools-scm,
}:
buildPythonPackage rec {
  pname = "tensorstore";
  version = "0.1.22";
  src = fetchPypi {
    inherit pname version;
    sha256 = "sha256-qQqytAtjXtThWh+a+dNLeQHlxYUGxdUOgK69aFDQtwA=";
  };
  propagatedBuildInputs = [numpy];
  preBuild = ''
    export BAZELISK_HOME=$TMPDIR
    export HOME=$TMPDIR
    echo "~~~~~~~~~~~~~~~~~~~~~ $TMPDIR"
  '';
}
14:21:29
@ethanabrooks:matrix.orgEthan BrooksI'm not seeing it getting printed, about to copy/paste drv output in her.14:22:28
@ethanabrooks:matrix.orgEthan BrooksDo you know how to get the drv to wrap? It gets cut off at the edge of my terminal14:22:45
@ethanabrooks:matrix.orgEthan Brooks 
Sourcing python-remove-tests-dir-hook
Sourcing python-catch-conflicts-hook.sh
Sourcing python-remove-bin-bytecode-hook.sh
Sourcing pip-build-hook
Using pipBuildPhase
Using pipShellHook
Sourcing pip-install-hook
Using pipInstallPhase
Sourcing python-imports-check-hook.sh
Using pythonImportsCheckPhase
Sourcing python-namespaces-hook
@nix { "action": "setPhase", "phase": "unpackPhase" }
unpacking sources
unpacking source archive /nix/store/9l98bzjql0w2kwn8yqbhi0dprv40ml9s-tensorstore-0.1.22.tar.gz
source root is tensorstore-0.1.22
setting SOURCE_DATE_EPOCH to timestamp 1659412668 of file tensorstore-0.1.22/setup.cfg
@nix { "action": "setPhase", "phase": "patchPhase" }
patching sources
Removing path dependencies
Finished removing path dependencies
Removing git dependencies
Finished removing git dependencies
@nix { "action": "setPhase", "phase": "configurePhase" }
configuring
no configure script, doing nothing
@nix { "action": "setPhase", "phase": "buildPhase" }
building
Executing pipBuildPhase
Creating a wheel...
WARNING: The directory '/homeless-shelter/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with s>
Processing /build/tensorstore-0.1.22
  Running command Preparing metadata (pyproject.toml)
  running dist_info
  creating /build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info
  writing /build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/PKG-INFO
  writing dependency_links to /build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/dependency_links.txt
  writing requirements to /build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/requires.txt
  writing top-level names to /build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/top_level.txt
  writing manifest file '/build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/SOURCES.txt'
  reading manifest file '/build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/SOURCES.txt'
  adding license file 'LICENSE'
  adding license file 'AUTHORS'
  writing manifest file '/build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/SOURCES.txt'
  creating '/build/pip-modern-metadata-usqz7tb5/tensorstore.dist-info'
  adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
  adding license file "AUTHORS" (matched pattern "AUTHORS*")
  Preparing metadata (pyproject.toml) ... done
Building wheels for collected packages: tensorstore
  Running command Building wheel for tensorstore (pyproject.toml)
  running bdist_wheel
  running build
  running build_py
  creating /build/tmp5ps3mqb4/lib.linux-x86_64-3.9
  creating /build/tmp5ps3mqb4/lib.linux-x86_64-3.9/tensorstore
  copying python/tensorstore/__init__.py -> /build/tmp5ps3mqb4/lib.linux-x86_64-3.9/tensorstore
  running build_ext
  /nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/bin/python3.9 -u bazelisk.py build -c opt //python/tensorstore:_tensorstore__shared_objects --verbose_failures --copt=-fvisibility=hidden
  Traceback (most recent call last):
    File "/build/tensorstore-0.1.22/bazelisk.py", line 472, in <module>
      sys.exit(main())
    File "/build/tensorstore-0.1.22/bazelisk.py", line 457, in main
      bazel_path = get_bazel_path()
    File "/build/tensorstore-0.1.22/bazelisk.py", line 440, in get_bazel_path
      maybe_makedirs(bazelisk_directory)
    File "/build/tensorstore-0.1.22/bazelisk.py", line 373, in maybe_makedirs
      raise e
    File "/build/tensorstore-0.1.22/bazelisk.py", line 370, in maybe_makedirs
      os.makedirs(path)
    File "/nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/lib/python3.9/os.py", line 215, in makedirs
      makedirs(head, exist_ok=exist_ok)
    File "/nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/lib/python3.9/os.py", line 215, in makedirs
14:23:05
@k900:0upti.meK900 Maybe add it to postPatch instead? 14:23:23
@ethanabrooks:matrix.orgEthan Brooks * 
Sourcing python-remove-tests-dir-hook
Sourcing python-catch-conflicts-hook.sh
Sourcing python-remove-bin-bytecode-hook.sh
Sourcing pip-build-hook
Using pipBuildPhase
Using pipShellHook
Sourcing pip-install-hook
Using pipInstallPhase
Sourcing python-imports-check-hook.sh
Using pythonImportsCheckPhase
Sourcing python-namespaces-hook
@nix { "action": "setPhase", "phase": "unpackPhase" }
unpacking sources
unpacking source archive /nix/store/9l98bzjql0w2kwn8yqbhi0dprv40ml9s-tensorstore-0.1.22.tar.gz
source root is tensorstore-0.1.22
setting SOURCE_DATE_EPOCH to timestamp 1659412668 of file tensorstore-0.1.22/setup.cfg
@nix { "action": "setPhase", "phase": "patchPhase" }
patching sources
Removing path dependencies
Finished removing path dependencies
Removing git dependencies
Finished removing git dependencies
@nix { "action": "setPhase", "phase": "configurePhase" }
configuring
no configure script, doing nothing
@nix { "action": "setPhase", "phase": "buildPhase" }
building
Executing pipBuildPhase
Creating a wheel...
WARNING: The directory '/homeless-shelter/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with s>
Processing /build/tensorstore-0.1.22
  Running command Preparing metadata (pyproject.toml)
  running dist_info
  creating /build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info
  writing /build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/PKG-INFO
  writing dependency_links to /build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/dependency_links.txt
  writing requirements to /build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/requires.txt
  writing top-level names to /build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/top_level.txt
  writing manifest file '/build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/SOURCES.txt'
  reading manifest file '/build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/SOURCES.txt'
  adding license file 'LICENSE'
  adding license file 'AUTHORS'
  writing manifest file '/build/pip-modern-metadata-usqz7tb5/tensorstore.egg-info/SOURCES.txt'
  creating '/build/pip-modern-metadata-usqz7tb5/tensorstore.dist-info'
  adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
  adding license file "AUTHORS" (matched pattern "AUTHORS*")
  Preparing metadata (pyproject.toml) ... done
Building wheels for collected packages: tensorstore
  Running command Building wheel for tensorstore (pyproject.toml)
  running bdist_wheel
  running build
  running build_py
  creating /build/tmp5ps3mqb4/lib.linux-x86_64-3.9
  creating /build/tmp5ps3mqb4/lib.linux-x86_64-3.9/tensorstore
  copying python/tensorstore/__init__.py -> /build/tmp5ps3mqb4/lib.linux-x86_64-3.9/tensorstore
  running build_ext
  /nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/bin/python3.9 -u bazelisk.py build -c opt //python/tensorstore:_tensorstore__shared_objects --verbose_failures --copt=-fvisibility=hidden
  Traceback (most recent call last):
    File "/build/tensorstore-0.1.22/bazelisk.py", line 472, in <module>
      sys.exit(main())
    File "/build/tensorstore-0.1.22/bazelisk.py", line 457, in main
      bazel_path = get_bazel_path()
    File "/build/tensorstore-0.1.22/bazelisk.py", line 440, in get_bazel_path
      maybe_makedirs(bazelisk_directory)
    File "/build/tensorstore-0.1.22/bazelisk.py", line 373, in maybe_makedirs
      raise e
    File "/build/tensorstore-0.1.22/bazelisk.py", line 370, in maybe_makedirs
      os.makedirs(path)
    File "/nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/lib/python3.9/os.py", line 215, in makedirs
      makedirs(head, exist_ok=exist_ok)
    File "/nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/lib/python3.9/os.py", line 215, in makedirs
      makedirs(head, exist_ok=exist_ok)
    File "/nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/lib/python3.9/os.py", line 225, in makedirs
      mkdir(name, mode)
  PermissionError: [Errno 13] Permission denied: '/homeless-shelter'
  error: command '/nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/bin/python3.9' failed with exit code 1
  error: subprocess-exited-with-error
14:23:37
@ethanabrooks:matrix.orgEthan Brooks 
Sourcing python-remove-tests-dir-hook
Sourcing python-catch-conflicts-hook.sh
Sourcing python-remove-bin-bytecode-hook.sh
Sourcing pip-build-hook
Using pipBuildPhase
Using pipShellHook
Sourcing pip-install-hook
Using pipInstallPhase
Sourcing python-imports-check-hook.sh
Using pythonImportsCheckPhase
Sourcing python-namespaces-hook
@nix { "action": "setPhase", "phase": "unpackPhase" }
unpacking sources
unpacking source archive /nix/store/9l98bzjql0w2kwn8yqbhi0dprv40ml9s-tensorstore-0.1.22.tar.gz
source root is tensorstore-0.1.22
setting SOURCE_DATE_EPOCH to timestamp 1659412668 of file tensorstore-0.1.22/setup.cfg
@nix { "action": "setPhase", "phase": "patchPhase" }
patching sources
Removing path dependencies
@nix { "action": "setPhase", "phase": "patchPhase" }
patching sources
Removing path dependencies
Finished removing path dependencies
Removing git dependencies
Finished removing git dependencies
@nix { "action": "setPhase", "phase": "configurePhase" }
configuring
no configure script, doing nothing
@nix { "action": "setPhase", "phase": "buildPhase" }
building
Executing pipBuildPhase
Creating a wheel...
WARNING: The directory '/homeless-shelter/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with s>
Processing /build/tensorstore-0.1.22
  Running command Preparing metadata (pyproject.toml)
  running dist_info
  creating /build/pip-modern-metadata-cucdl47w/tensorstore.egg-info
  writing /build/pip-modern-metadata-cucdl47w/tensorstore.egg-info/PKG-INFO
  writing dependency_links to /build/pip-modern-metadata-cucdl47w/tensorstore.egg-info/dependency_links.txt
  writing requirements to /build/pip-modern-metadata-cucdl47w/tensorstore.egg-info/requires.txt
  writing top-level names to /build/pip-modern-metadata-cucdl47w/tensorstore.egg-info/top_level.txt
  writing manifest file '/build/pip-modern-metadata-cucdl47w/tensorstore.egg-info/SOURCES.txt'
  reading manifest file '/build/pip-modern-metadata-cucdl47w/tensorstore.egg-info/SOURCES.txt'
  adding license file 'LICENSE'
  adding license file 'AUTHORS'
  writing manifest file '/build/pip-modern-metadata-cucdl47w/tensorstore.egg-info/SOURCES.txt'
  creating '/build/pip-modern-metadata-cucdl47w/tensorstore.dist-info'
  adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
  adding license file "AUTHORS" (matched pattern "AUTHORS*")
  Preparing metadata (pyproject.toml) ... done
Building wheels for collected packages: tensorstore
  Running command Building wheel for tensorstore (pyproject.toml)
  running bdist_wheel
  running build
  running build_py
  creating /build/tmp9sgtnd4_/lib.linux-x86_64-3.9
  creating /build/tmp9sgtnd4_/lib.linux-x86_64-3.9/tensorstore
  copying python/tensorstore/__init__.py -> /build/tmp9sgtnd4_/lib.linux-x86_64-3.9/tensorstore
  running build_ext
  /nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/bin/python3.9 -u bazelisk.py build -c opt //python/tensorstore:_tensorstore__shared_objects --verbose_failures --copt=-fvisibility=hidden
  Traceback (most recent call last):
    File "/build/tensorstore-0.1.22/bazelisk.py", line 472, in <module>
      sys.exit(main())
    File "/build/tensorstore-0.1.22/bazelisk.py", line 457, in main
      bazel_path = get_bazel_path()
    File "/build/tensorstore-0.1.22/bazelisk.py", line 440, in get_bazel_path
      maybe_makedirs(bazelisk_directory)
    File "/build/tensorstore-0.1.22/bazelisk.py", line 373, in maybe_makedirs
      raise e
    File "/build/tensorstore-0.1.22/bazelisk.py", line 370, in maybe_makedirs
      os.makedirs(path)
    File "/nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/lib/python3.9/os.py", line 215, in makedirs
      makedirs(head, exist_ok=exist_ok)
    File "/nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/lib/python3.9/os.py", line 215, in makedirs
      makedirs(head, exist_ok=exist_ok)
    File "/nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/lib/python3.9/os.py", line 225, in makedirs
      mkdir(name, mode)
  PermissionError: [Errno 13] Permission denied: '/homeless-shelter'
  error: command '/nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/bin/python3.9' failed with exit code 1
  error: subprocess-exited-with-error

  × Building wheel for tensorstore (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> See above for output.

  note: This error originates from a subprocess, and is likely not a problem with pip.
  full command: /nix/store/9xnq0r2a14s9qc5c27ppzq1p7j8wqx22-python3-3.9.13/bin/python3.9 /nix/store/414glff7d09ydraibkzwbjy0p3g78gz3-python3.9-pip-22.1.2/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_w>
  cwd: /build/tensorstore-0.1.22
  Building wheel for tensorstore (pyproject.toml) ... error
  ERROR: Failed building wheel for tensorstore
Failed to build tensorstore
ERROR: Failed to build one or more wheels
14:24:47
@ethanabrooks:matrix.orgEthan BrooksSeems to be the same14:25:15
@k900:0upti.meK900That does not look right 14:25:28
@k900:0upti.meK900How are you building it exactly? 14:25:36
@ethanabrooks:matrix.orgEthan Brooks 
nix build
14:25:51
@ethanabrooks:matrix.orgEthan BrooksI'm using flakes14:25:54
@ethanabrooks:matrix.orgEthan BrooksI can throw together a minimal repro real quick14:26:16
@ethanabrooks:matrix.orgEthan BrooksI may have identified an issue (if not the issue)14:32:19
@ethanabrooks:matrix.orgEthan Brooks Ok I think I am past the /homeless-shelter issue -- I was not probably linking the tensorstore.nix override in my flake.nix. 14:34:48
@ethanabrooks:matrix.orgEthan BrooksI'm running into a different issue relating to tensorstore, but I don't want to monopolize this channel.14:35:13
@ethanabrooks:matrix.orgEthan BrooksI can work on it a bit and if I can't figure it out, I'll check back in, if that's alright.14:35:30
@ethanabrooks:matrix.orgEthan Brooks

Is it possible to apply git patches to source code, as in

buildPythonPackage {
  ...
  patches = [./nixfiles/tensorstore.patch];
}
14:48:36
@k900:0upti.meK900Yes 14:48:53
@ethanabrooks:matrix.orgEthan Brooks

Is this the format that is expected for a patch?

Unstaged changes after reset:
M	bazelisk.py
diff --git a/bazelisk.py b/bazelisk.py
index 919b776..b07d3dc 100755
--- a/bazelisk.py
+++ b/bazelisk.py
@@ -270,6 +270,7 @@ def trim_suffix(string, suffix):
 def download_bazel_into_directory(version, is_commit, directory):
   bazel_filename = determine_bazel_filename(version)
   bazel_url = determine_url(version, is_commit, bazel_filename)
+  print("######################################", bazel_url)

   filename_suffix = determine_executable_filename_suffix()
   bazel_directory_name = trim_suffix(bazel_filename, filename_suffix)
14:50:06
@ethanabrooks:matrix.orgEthan Brooks I produced that with git diff > /path/to/tensorstore.patch 14:50:30
@ethanabrooks:matrix.orgEthan BrooksI'm a little new to patch files -- and to nix, so thank you for all your help!14:50:55
@k900:0upti.meK900Generally yes 14:51:00
@ethanabrooks:matrix.orgEthan Brooks

Where can I store these patch files? I'm getting

error: getting status of '/nix/store/8qyfa22w7ci343lx8dy1jkpd4pvxqxl6-source/tensorstore.patch': No such file or directory
14:56:00
@k900:0upti.meK900You need to add it to git 14:56:12
@k900:0upti.meK900For it to work 14:56:14
@ethanabrooks:matrix.orgEthan BrooksPerfect! That worked. Thank you.14:56:35
@ethanabrooks:matrix.orgEthan Brooks I am not 100% sure this is a nix issue but tensorstore/bazelisk.py seems to be trying to download bazel right here: https://github.com/google/tensorstore/blob/fd14f04c33620645da94667c4fa860b258417dcf/bazelisk.py#L449 15:08:28

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