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Nix Geospatial Team

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Nix Geospatial packages maintenance. Team board - https://github.com/orgs/NixOS/projects/47/views/18 Servers

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25 Sep 2024
@imincik:matrix.orgIvan Mincik (imincik)
In reply to @autra:trancart.eu
I'm executing nixpgks-review for geos. From what I can gather, psycopg and gdal are still failing...
You can check nixpkgs-review logs in .cache/nixpkgs-review directory
.
13:10:06
@sikmir:matrix.orgsikmir
In reply to @autra:trancart.eu
From which arch to which arch? Btw where do you look to get these build status? Is there a way to get notified?
nix build -L .#pkgsCross.armv7l-hf-multiplatform.libspatialite
22:51:00
26 Sep 2024
@autra:trancart.euautra sikmir: have you tried bisecting already? Do we have a known good commit in the past? 07:55:09
@sikmir:matrix.orgsikmir
In reply to @autra:trancart.eu
sikmir: have you tried bisecting already? Do we have a known good commit in the past?
I've not investigated yet
22:35:24
27 Sep 2024
@autra:trancart.euautra Wow that being said, bisecting nixpkgs is not always a piece of cake. I naively started "git bisect run nix-build ..." for gmt from somewhere in 2022, and the amount of rebuilds is massive. Next time I'll be a bit more clever :-) 07:17:40
@imincik:matrix.orgIvan Mincik (imincik)
In reply to @autra:trancart.eu
Wow that being said, bisecting nixpkgs is not always a piece of cake. I naively started "git bisect run nix-build ..." for gmt from somewhere in 2022, and the amount of rebuilds is massive. Next time I'll be a bit more clever :-)
I did successful bisecting on qgis once. It took long time but i found the issue.
16:40:40
@autra:trancart.euautra
In reply to @imincik:matrix.org
I did successful bisecting on qgis once. It took long time but i found the issue.
The bisect just finished, it took nearly 48h
18:06:58
@autra:trancart.euautraI could have been more clever by checking long-lived branches first, because those would have made a better use of cache.nixos.org, I'm sure.18:07:57
@autra:trancart.euautra

The gmt build is broken by 25bc618215a7: libxml2: 2.12.7 → 2.13.2.

The error is (during the build of gmt) :

nix/store/81xsp348yfgmaan9r5055mcdjfw7a8wc-binutils-2.42/bin/ld: /nix/store/hfb55givv2afsz93b705hkjd9y98wqam-libspatialite-5.1.0/lib/libspatialite.so.8: undefined reference to `xmlNanoHTTPCleanup@LIBXML2_2.4.30'
collect2: error: ld returned 1 exit status

It's not the only one having this error (https://github.com/NixOS/nixpkgs/pull/331127 and https://github.com/NixOS/nixpkgs/issues/331121), but I don't know how to apply it to gmt. It does not depend directly from libxml2

18:50:17
@autra:trancart.euautrahttps://github.com/NixOS/nixpkgs/pull/331166/files same fix18:50:37
@autra:trancart.euautrais there a way to get all the dependencies of a derivation without building it? libxml2 is a dependency of libspatialite, but the fix is already applied... But maybe it draws libxml2 from somewhere else too?18:51:33
@autra:trancart.euautraomg, it's on netcdf. 19:07:54
@autra:trancart.euautra ok so everyone seems to have fixed that by using (libxml2.override { enableHttp = true; }). But gmt does not depend directly from it. It depends from libxml2 through libspatialite (the fix is already applied) and through netcdf. 19:39:51
@autra:trancart.euautraIf I patch netcdf, it works, but is it ok?19:40:04
@autra:trancart.euautra

I also did:

    (netcdf.override { libxml2 = (libxml2.override { enableHttp = true; }); })

In gmt's build input, but that does not work

19:40:42
@autra:trancart.euautraAh I need to do that in all-packages, it's probaly too late in buildInputs. 19:49:10
@autra:trancart.euautraAll right, sorry for the noise, PR time :-)19:49:17
30 Sep 2024
@imincik:matrix.orgIvan Mincik (imincik) autra: thanks for your investigation. Reading your messages now. 07:30:22
1 Oct 2024
@-_o:matrix.org-_o joined the room.20:59:47
2 Oct 2024
@raul.nanclares:matrix.orgRaul Nanclares joined the room.14:38:30
3 Oct 2024
@autra:trancart.euautraHi! do we have blockers for 24.11? (I didn't see any but...)07:43:27

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